Package: bridgesampling 1.1-5
bridgesampling: Bridge Sampling for Marginal Likelihoods and Bayes Factors
Provides functions for estimating marginal likelihoods, Bayes factors, posterior model probabilities, and normalizing constants in general, via different versions of bridge sampling (Meng & Wong, 1996, <https://www3.stat.sinica.edu.tw/statistica/j6n4/j6n43/j6n43.htm>). Gronau, Singmann, & Wagenmakers (2020) <doi:10.18637/jss.v092.i10>.
Authors:
bridgesampling_1.1-5.tar.gz
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bridgesampling.pdf |bridgesampling.html✨
bridgesampling/json (API)
NEWS
| # Install 'bridgesampling' in R: |
| install.packages('bridgesampling', repos = c('https://quentingronau.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/quentingronau/bridgesampling/issues
Last updated 1 years agofrom:6793386ffe. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 23 2024 |
| R-4.5-win | OK | Aug 23 2024 |
| R-4.5-linux | OK | Aug 23 2024 |
| R-4.4-win | OK | Aug 23 2024 |
| R-4.4-mac | OK | Aug 23 2024 |
| R-4.3-win | OK | Aug 23 2024 |
| R-4.3-mac | OK | Aug 23 2024 |
Exports:bayes_factorbfbridge_samplererror_measureslogmlpost_prob
Dependencies:BrobdingnagclicodacolorspacefarvergluelabelinglatticelifecyclemagrittrMatrixmunsellmvtnormR6RColorBrewerrlangscalesstringistringrvctrsviridisLite
A Tutorial on Bridge Sampling
Rendered frombridgesampling_tutorial.pdf.asisusingR.rsp::asison Aug 23 2024.Last update: 2017-03-23
Started: 2017-03-23
Bayesian One-Sample T-Test (Stan)
Rendered frombridgesampling_stan_ttest.Rmdusingknitr::rmarkdownon Aug 23 2024.Last update: 2018-10-10
Started: 2017-04-25
bridgesampling: An R Package for Estimating Normalizing Constants (Extended)
Rendered frombridgesampling_paper_extended.pdf.asisusingR.rsp::asison Aug 23 2024.Last update: 2018-10-16
Started: 2018-10-16
bridgesampling: An R Package for Estimating Normalizing Constants (JSS version)
Rendered frombridgesampling_paper.pdf.asisusingR.rsp::asison Aug 23 2024.Last update: 2018-10-21
Started: 2017-10-18
Hierarchical Normal Example (JAGS)
Rendered frombridgesampling_example_jags.Rmdusingknitr::rmarkdownon Aug 23 2024.Last update: 2018-08-19
Started: 2017-04-25
Hierarchical Normal Example (nimble)
Rendered frombridgesampling_example_nimble.Rmdusingknitr::rmarkdownon Aug 23 2024.Last update: 2018-10-10
Started: 2018-08-21
Hierarchical Normal Example (Stan)
Rendered frombridgesampling_example_stan.Rmdusingknitr::rmarkdownon Aug 23 2024.Last update: 2018-08-19
Started: 2017-04-25
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bayes Factor(s) from Marginal Likelihoods | bayes_factor bayes_factor.default bf bf.bridge bf.bridge_list bf.default |
| Log Marginal Likelihood via Bridge Sampling | bridge_sampler bridge_sampler.matrix bridge_sampler.mcmc bridge_sampler.mcmc.list bridge_sampler.MCMC_refClass bridge_sampler.rjags bridge_sampler.runjags bridge_sampler.stanfit bridge_sampler.stanreg |
| Methods for bridge and bridge_list objects | bridge-methods print.bridge print.bridge_list print.summary.bridge print.summary.bridge_list summary.bridge summary.bridge_list |
| Error Measures for Estimated Marginal Likelihood | error_measures error_measures.bridge error_measures.bridge_list |
| Standardized International Exchange Rate Changes from 1975 to 1986 | ier |
| Log Marginal Likelihoods from Bridge Objects | logml logml.bridge logml.bridge_list |
| Posterior Model Probabilities from Marginal Likelihoods | post_prob post_prob.bridge post_prob.bridge_list post_prob.default |
| Turtles Data from Janzen, Tucker, and Paukstis (2000) | turtles |
